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On this page
  • 1. High Transaction and Subscription Fees
  • 2. Limited Design and Theme Customization
  • 3. Limited Control Over Checkout
  • 4. SEO Limitations
  • 5. App Ecosystem Dependence
  • 6. Limited Multi-Currency and Multi-Language Features
  • 7. High Costs for Scalability
  • 8. Limited Data Ownership and Export Options
  • 9. Limited Support for B2B Features
  • 10. Restrictions on Blogging and Content Marketing
  • Get started with Shopify

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  1. E-Commerce Platforms
  2. Shopify Fees Overview

Shopify Limitations

Shopify is one of the leading e-commerce platforms globally, praised for its ease of use, extensive app ecosystem, and scalability. It enables sellers to create and manage online stores for physical products, digital goods, or services without requiring advanced technical expertise. However, Shopify is not without its limitations. This overview explores the platform’s constraints, offering sellers a detailed perspective on areas where Shopify might fall short, along with tips for mitigating these challenges.


1. High Transaction and Subscription Fees

Monthly Subscription Costs

  • Shopify’s pricing tiers include Basic Shopify ($39/month), Shopify ($105/month), and Advanced Shopify ($399/month), plus a custom-priced Shopify Plus plan for enterprise businesses.

  • For small businesses, these costs can add up quickly, especially when combined with necessary apps for additional functionality.

Transaction Fees

  • Shopify charges transaction fees ranging from 2.9% + $0.30 per transaction (Basic plan) to 2.4% + $0.30 (Advanced plan), when using Shopify Payments.

  • If you use a third-party payment gateway, Shopify imposes an additional transaction fee (0.5% to 2%) on top of the payment processor’s fees.

Add-Ons and Apps

  • Many essential features, such as advanced SEO tools, loyalty programs, and product reviews, require paid apps or upgrades, further increasing costs.

Impact on Sellers

  • Small sellers or startups may find Shopify's pricing prohibitive, especially as sales volume grows.

  • Using third-party payment gateways can reduce profit margins due to double transaction fees.

Tips for Sellers

  • Use Shopify Payments where possible to avoid additional transaction fees.

  • Consider all recurring costs, including apps and add-ons, before choosing Shopify as your platform.


2. Limited Design and Theme Customization

Theme Options

  • Shopify offers a variety of themes, but only 10 themes are free. Premium themes can cost between $150–$350.

  • While themes are visually appealing, many sellers find them restrictive in terms of layout and functionality without advanced coding knowledge.

Customization Constraints

  • Shopify themes use a proprietary coding language called Liquid, which can be challenging for sellers without technical skills.

  • Customizing beyond basic changes often requires hiring a Shopify developer.

Impact on Sellers

  • Sellers looking for unique and highly customized storefronts may find Shopify’s design options limited.

  • Premium themes and developers add to the overall cost of using the platform.

Tips for Sellers

  • Start with a free theme that closely matches your vision, then gradually customize it as needed.

  • Work with Shopify experts or developers for advanced design needs to ensure professional results.


3. Limited Control Over Checkout

Checkout Restrictions

  • Shopify’s checkout process is not fully customizable, even on higher-tier plans. Sellers can only make minor modifications, such as adjusting colors or adding a logo.

  • Advanced checkout customizations (e.g., adding custom fields, reordering steps) are only available on the Shopify Plus plan.

Third-Party Payment Gateways

  • Shopify limits third-party payment gateway customizations and redirects customers away from your site for payment processing, which may reduce conversions.

Impact on Sellers

  • A lack of customization can hinder brands with unique checkout requirements or B2B features.

  • Limited control over checkout may negatively affect the user experience and conversion rates.

Tips for Sellers

  • Consider whether Shopify’s default checkout experience aligns with your audience's expectations.

  • Upgrade to Shopify Plus if advanced checkout customizations are crucial to your business.


4. SEO Limitations

Technical SEO Constraints

  • Shopify automatically adds /collections/ and /products/ prefixes to URLs, making them less clean and potentially affecting SEO performance.

  • It lacks advanced SEO tools, requiring sellers to rely on third-party apps for features like schema markup, advanced redirects, and structured data.

Duplicate Content Issues

  • Shopify’s handling of product variants and pagination can lead to duplicate content, which may negatively impact search engine rankings.

Impact on Sellers

  • Sellers focused on organic traffic may struggle with Shopify’s default SEO limitations.

  • Duplicate content issues require manual intervention or apps to resolve.

Tips for Sellers

  • Use SEO apps like SEO Manager or Plug In SEO to improve on-page optimization.

  • Regularly audit your store using tools like Ahrefs or SEMrush to identify and fix SEO issues.


5. App Ecosystem Dependence

Essential Features Require Apps

  • Shopify’s core platform is streamlined, but sellers often need apps for essential features such as advanced shipping rules, product reviews, loyalty programs, or subscription services.

  • Many apps come with recurring subscription costs, significantly increasing operational expenses.

App Compatibility Issues

  • Some apps may conflict with each other, especially as the number of installed apps grows.

  • Heavy reliance on apps can slow down your site’s performance.

Impact on Sellers

  • Over-reliance on apps adds complexity and increases long-term costs.

  • Performance degradation can result in a poor user experience.

Tips for Sellers

  • Choose apps from reputable developers with positive reviews and consistent updates.

  • Periodically audit installed apps and remove unused ones to improve site performance.


6. Limited Multi-Currency and Multi-Language Features

Multi-Currency

  • Shopify allows multi-currency functionality only with Shopify Payments. Third-party payment gateways may not fully support this feature.

Multi-Language

  • While Shopify supports multi-language stores, it requires third-party apps or themes for effective implementation, as native support is limited.

Impact on Sellers

  • International sellers face challenges creating seamless experiences for global customers.

  • Relying on apps for multi-language support increases costs and complexity.

Tips for Sellers

  • Use Shopify’s native multi-currency and multi-language tools when possible.

  • For advanced needs, consider apps like Weglot or Langify for multilingual functionality.


7. High Costs for Scalability

Scaling Challenges

  • As your store grows, Shopify's tiered pricing structure increases costs significantly.

  • High-growth businesses may find the platform’s scalability cost-prohibitive, especially when factoring in apps and higher-tier plans.

Transaction and Payment Limits

  • Transaction fees remain a challenge for large-scale sellers using third-party gateways, cutting into profit margins.

Impact on Sellers

  • Fast-scaling sellers may face significant cost increases that affect profitability.

  • Advanced features like bulk pricing, advanced reporting, and automation require higher-tier plans or apps.

Tips for Sellers

  • Regularly analyze operational costs to ensure they align with your revenue growth.

  • Plan for higher-tier upgrades as part of your long-term growth strategy.


8. Limited Data Ownership and Export Options

Data Portability

  • Shopify controls much of the backend infrastructure, limiting sellers' ability to access or export full control of their data.

  • Migrating your store to another platform can be challenging, especially for stores with a large product catalog.

Impact on Sellers

  • Sellers may feel locked into Shopify’s ecosystem, making it difficult to switch platforms in the future.

  • Limited data portability complicates long-term planning.

Tips for Sellers

  • Regularly back up your store data using apps or export tools.

  • Consider whether Shopify’s ecosystem aligns with your long-term e-commerce goals.


9. Limited Support for B2B Features

B2B Limitations

  • Shopify’s standard plans lack advanced B2B functionalities like tiered pricing, bulk ordering, and customer-specific catalogs.

  • These features are only available on Shopify Plus, making them inaccessible to smaller B2B sellers.

Impact on Sellers

  • Smaller B2B sellers may find Shopify’s features insufficient for their needs.

  • Upgrading to Shopify Plus adds significant costs.

Tips for Sellers

  • Use apps like Wholesale Club or Bold Custom Pricing for basic B2B functionality on lower-tier plans.

  • Evaluate whether Shopify Plus is necessary for your long-term B2B strategy.


10. Restrictions on Blogging and Content Marketing

Basic Blogging Tools

  • Shopify’s built-in blogging functionality is minimal and lacks advanced features like category management, post scheduling, or rich media embedding.

  • Sellers focused on content marketing may need external tools or platforms for effective blogging.

Impact on Sellers

  • Content-driven strategies are harder to implement within Shopify’s limited blogging framework.

Tips for Sellers

  • Integrate your Shopify store with a WordPress blog for advanced content marketing capabilities.


Shopify is a user-friendly platform with powerful features, but its limitations can impact sellers depending on their business size and goals. From high costs and limited customizations to SEO challenges and B2B constraints, these issues highlight the importance of evaluating whether Shopify is the right fit for your specific needs. By leveraging third-party apps, optimizing costs, and planning for growth, sellers can navigate Shopify’s limitations while capitalizing on its strengths.


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